Index

A

advancedClusterHoehnerExampleData (module)

B

basicClusterHoehnerExampleData (module)

build_nodemap() (pyGCluster.Cluster method)

C

calculate_distance_matrix() (pyGCluster.Cluster method) check4convergence() (pyGCluster.Cluster method) check_if_data_is_log2_transformed() (pyGCluster.Cluster method) Cluster (class in pyGCluster)

convergence_plot() (pyGCluster.Cluster method) create_default_alphabet() (in module pyGCluster) create_rainbow_colors() (pyGCluster.Cluster method)

D

delete_resampling_results() (pyGCluster.Cluster method) do_it_all() (pyGCluster.Cluster method) draw_community_expression_maps() (pyGCluster.Cluster method) draw_expression_map() (pyGCluster.Cluster method)

draw_expression_map_for_cluster() (pyGCluster.Cluster method) draw_expression_map_for_community_cluster() (pyGCluster.Cluster method) draw_expression_profiles() (pyGCluster.Cluster method)

F

frequencies() (pyGCluster.Cluster method)

G

getpyGPickleInfo (module)

I

info() (pyGCluster.Cluster method)

L

load() (pyGCluster.Cluster method)

M

median() (pyGCluster.Cluster method)

P

plot_clusterfreqs() (pyGCluster.Cluster method) plot_mean_distributions() (pyGCluster.Cluster method) plot_nodetree() (pyGCluster.Cluster method)

plotCommunities (module) pyGCluster (module)

R

resample() (pyGCluster.Cluster method)

resampling_multiprocess() (in module pyGCluster)

S

save() (pyGCluster.Cluster method) seekAndDestry() (in module pyGCluster)

simpleExpressionMap (module)

T

test_pyGCluster (module), [1]

W

write_dot() (pyGCluster.Cluster method)

write_legend() (pyGCluster.Cluster method)

Y

yield_noisejected_dataset() (in module pyGCluster)